PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G210500.5.p
Common NamePRUPE_ppa003436mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 576aa    MW: 63177.2 Da    PI: 8.6476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G210500.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.88.4e-18271320255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Prupe.5G210500.5.p 271 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 320
                         889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-24266341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-19268340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-15271323No hitNo description
PfamPF000103.2E-15271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-13275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKPTHDF LSLYSHPTAQ QDPRPPSQGG YLETHDFLQP LERMGKKCIA  60
KEETSVEIST AEKPVSHAAA AAAQPTSSVE HILPGGIGTY TISHISYFNQ RVPKPEGSPV  120
FTVTQPQASS TDRNVEEHSN CSSYTGSGFT LWEESALKNK GKTGKENLGE RPVGIVRGQW  180
TSSERPAQSS SNNHRNCFSA QSSGQKNISF MDMMKSAAKG STQEDELDDE EEFVLKKETS  240
TTTTTATTPY KGDLRVKVDV KGSDQKANTP RSKHSATEQR RRSKINDRFQ MLRELIPHSD  300
QKRDKASFLL EVIEYIQFLQ EKVNKYEGSY QGWNPDPAKL MPWRNNPKLR ESYCDQSRGM  360
NGGSGPALVF AAKFDEKTTS VSPSIPGSSA QNPVESDTST ETTFKAMDHH PGITSKPMPF  420
PLSMQPNFFT PVRSDGAAVP QLPPRLPSDA ENTSQHQSML CQTVSRATDG AAARDKLKEQ  480
ELTIEGGRIN ISSAYSQGLL NTLTQALQNS GVDLSQASIS VQIELGKRAN SRSPIPKSVV  540
KDNEILSSNQ GKRHSRVASG EDSEHAPKKL KTGRN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210865.10.0hypothetical protein PRUPE_ppa003436mg
SwissprotQ9LEZ31e-140BIM1_ARATH; Transcription factor BIM1
TrEMBLM5WEB40.0M5WEB4_PRUPE; Uncharacterized protein
STRINGPOPTR_0015s03550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-138bHLH family protein